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psych (version 1.3.2)

Procedures for Psychological, Psychometric, and Personality Research

Description

A number of routines for personality, psychometrics and experimental psychology. Functions are primarily for scale construction using factor analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Item Response Theory is done using factor analysis of tetrachoric and polychoric correlations. Functions for simulating particular item and test structures are included. Several functions serve as a useful front end for structural equation modeling. Graphical displays of path diagrams, factor analysis and structural equation models are created using basic graphics. Some of the functions are written to support a book on psychometrics as well as publications in personality research. For more information, see the personality-project.org/r webpage.

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Version

Install

install.packages('psych')

Monthly Downloads

186,036

Version

1.3.2

License

GPL (>= 2)

Maintainer

William Revelle

Last Published

February 26th, 2013

Functions in psych (1.3.2)

ICC

Intraclass Correlations (ICC1, ICC2, ICC3 from Shrout and Fleiss)
alpha

Find two estimates of reliability: Cronbach's alpha and Guttman's Lambda 6.
SD

Find the Standard deviation for a vector, matrix, or data.frame - do not return error if there are no cases
ICLUST.sort

Sort items by absolute size of cluster loadings
cushny

A data set from Cushny and Peebles (1905) on the effect of three drugs on hours of sleep, used by Student (1908)
Harman

Two data sets from Harman (1967). 9 cognitive variables from Holzinger and 8 emotional variables from Burt
cluster.cor

Find correlations of composite variables from a larger matrix
epi.bfi

13 personality scales from the Eysenck Personality Inventory and Big 5 inventory
diagram

Helper functions for drawing path model diagrams
ICLUST.cluster

Function to form hierarchical cluster analysis of items
block.random

Create a block randomized structure for n independent variables
fisherz

Fisher r to z and z to r and confidence intervals
error.bars

Plot means and confidence intervals
bfi

25 Personality items representing 5 factors
Schmid

12 variables created by Schmid and Leiman to show the Schmid-Leiman Transformation
biplot.psych

Draw biplots of factor or component scores by factor or component loadings
blot

Bond's Logical Operations Test -- BLOT
describe

Basic descriptive statistics useful for psychometrics
ICLUST.rgraph

Draw an ICLUST graph using the Rgraphviz package
lowerUpper

Combine two square matrices to have a lower off diagonal for one, upper off diagonal for the other
burt

11 emotional variables from Burt (1915)
cluster2keys

Convert a cluster vector (from e.g., kmeans) to a keys matrix suitable for scoring item clusters.
cor2dist

Convert correlations to distances (necessary to do multidimensional scaling of correlation data)
VSS.scree

Plot the successive eigen values for a scree test
cortest.bartlett

Bartlett's test that a correlation matrix is an identity matrix
eigen.loadings

Convert eigen vectors and eigen values to the more normal (for psychologists) component loadings
error.bars.by

Plot means and confidence intervals for multiple groups
VSS.parallel

Compare real and random VSS solutions
cluster.loadings

Find item by cluster correlations, corrected for overlap and reliability
partial.r

Find the partial correlations for a set (x) of variables with set (y) removed.
fa.diagram

Graph factor loading matrices
cluster.fit

cluster Fit: fit of the cluster model to a correlation matrix
fa.sort

Sort factor analysis or principal components analysis loadings
Harman.8

Correlations of eight physical variables (from Harman, 1966)
sim.structure

Create correlation matrices or data matrices with a particular measurement and structural model
df2latex

Convert a data frame, correlation matrix, or factor analysis output to a LaTeX table
plot.psych

Plotting functions for the psych package of class ``psych"
corr.test

Find the correlations, sample sizes, and probability values between elements of a matrix or data.frame.
heights

A data.frame of the Galton (1888) height and cubit data set.
describeBy

Basic summary statistics by group
harmonic.mean

Find the harmonic mean of a vector, matrix, or columns of a data.frame
Harman.5

5 socio-economic variables from Harman (1967)
Yule

From a two by two table, find the Yule coefficients of association, convert to phi, or polychoric, recreate table the table to create the Yule coefficient.
bock

Bock and Liberman (1970) data set of 1000 observations of the LSAT
cosinor

Functions for analysis of circadian or diurnal data
cities

Distances between 11 US cities
Promax

Perform bifactor, promax or targeted rotations and return the inter factor angles.
cluster.plot

Plot factor/cluster loadings and assign items to clusters by their highest loading.
galton

Galton's Mid parent child height data
kaiser

Apply the Kaiser normalization when rotating factors
cortest.mat

Chi square tests of whether a single matrix is an identity matrix, or a pair of matrices are equal.
ICLUST.graph

create control code for ICLUST graphical output
score.items

Score item composite scales and find Cronbach's alpha, Guttman lambda 6 and item whole correlations
geometric.mean

Find the geometric mean of a vector or columns of a data.frame.
ellipses

Plot data and 1 and 2 sigma correlation ellipses
factor.rotate

``Hand" rotate a factor loading matrix
affect

Two data sets of affect and arousal scores as a function of personality and movie conditions
scrub

A utility for basic data cleaning and recoding. Changes values outside of minimum and maximum limits to NA.
VSS.plot

Plot VSS fits
table2matrix

Convert a table with counts to a matrix or data.frame representing those counts.
cor.plot

Create an image plot for a correlation or factor matrix
polar

Convert Cartesian factor loadings into polar coordinates
income

US family income from US census 2008
count.pairwise

Count number of pairwise cases for a data set with missing (NA) data.
Tucker

9 Cognitive variables discussed by Tucker and Lewis (1973)
Dwyer

8 cognitive variables used by Dwyer for an example.
factor2cluster

Extract cluster definitions from factor loadings
parcels

Find miniscales (parcels) of size 2 or 3 from a set of items
scatter.hist

Draw a scatter plot with associated X and Y histograms, densitie and correlation
mat.sort

Sort the elements of a correlation matrix to reflect factor loadings
headTail

Combine calls to head and tail
factor.stats

Find various goodness of fit statistics for factor analysis and principal components
cor.smooth

Smooth a non-positive definite correlation matrix to make it positive definite
error.crosses

Plot x and y error bars
cor.wt

The sample size weighted correlation may be used in correlating aggregated data
circ.tests

Apply four tests of circumplex versus simple structure
cta

Simulate the C(ues) T(endency) A(ction) model of motivation
mssd

Find von Neuman's Mean Square of Successive Differences
score.alpha

Score scales and find Cronbach's alpha as well as associated statistics
principal

Principal components analysis (PCA)
comorbidity

Convert base rates of two diagnoses and their comorbidity into phi, Yule, and tetrachorics
draw.tetra

Draw a correlation ellipse and two normal curves to demonstrate tetrachoric correlation
Harman.political

Eight political variables used by Harman (1967) as example 8.17
cubits

Galton's example of the relationship between height and 'cubit' or forearm length
Bechtoldt

Seven data sets showing a bifactor solution.
structure.list

Create factor model matrices from an input list
dummy.code

Create dummy coded variables
fa

Exploratory Factor analysis using MinRes (minimum residual) as well as EFA by Principal Axis, Weighted Least Squares or Maximum Likelihood
VSS

Apply the Very Simple Structure and MAP criteria to determine the appropriate number of factors.
iclust

iclust: Item Cluster Analysis -- Hierarchical cluster analysis using psychometric principles
errorCircles

Two way plots of means, error bars, and sample sizes
sat.act

3 Measures of ability: SATV, SATQ, ACT
interp.median

Find the interpolated sample median, quartiles, or specific quantiles for a vector, matrix, or data frame
mixed.cor

Find correlations for mixtures of continuous, polytomous, and dichotomous variables
00.psych

A package for personality, psychometric, and psychological research
score.irt

Find Item Response Theory (IRT) based scores for dichotomous or polytomous items
thurstone

Thurstone Case V scaling
omega.graph

Graph hierarchical factor structures
matrix.addition

A function to add two vectors or matrices
reverse.code

Reverse the coding of selected items prior to scale analysis
r.test

Tests of significance for correlations
factor.congruence

Coefficient of factor congruence
irt.responses

Plot probability of multiple choice responses as a function of a latent trait
pairs.panels

SPLOM, histograms and correlations for a data matrix
read.clipboard

shortcut for reading from the clipboard
simulation.circ

Simulations of circumplex and simple structure
iqitems

16 multiple choice IQ items
psych.misc

Miscellaneous helper functions for the psych package
winsor

Find the Winsorized scores, means, sds or variances for a vector, matrix, or data.frame
phi

Find the phi coefficient of correlation between two dichotomous variables
residuals.psych

Extract residuals from various psych objects
mardia

Calculate univariate or multivariate (Mardia's test) skew and kurtosis for a vector, matrix, or data.frame
sim

Functions to simulate psychological/psychometric data.
statsBy

Find statistics (including correlations) within and between groups for basic multilevel analyses
p.rep

Find the probability of replication for an F, t, or r and estimate effect size
fa.parallel

Scree plots of data or correlation matrix compared to random ``parallel" matrices
rescale

Function to convert scores to ``conventional " metrics
factor.residuals

R* = R- F F'
spider

Make "radar" or "spider" plots.
irt.item.diff.rasch

Simple function to estimate item difficulties using IRT concepts
sim.hierarchical

Create a population or sample correlation matrix, perhaps with hierarchical structure.
iclust.diagram

Draw an ICLUST hierarchical cluster structure diagram
smc

Find the Squared Multiple Correlation (SMC) of each variable with the remaining variables in a matrix
fa.extension

Apply Dwyer's factor extension to find factor loadings for extended variables
tr

Find the trace of a square matrix
vegetables

Paired comparison of preferences for 9 vegetables
bi.bars

Draw pairs of bargraphs based on two groups
structure.diagram

Draw a structural equation model specified by two measurement models and a structural model
predict.psych

Prediction function for factor analysis or principal components
paired.r

Test the difference between (un)paired correlations
withinBetween

An example of the distinction between within group and between group correlations
irt.1p

Item Response Theory estimate of theta (ability) using a Rasch (like) model
factor.model

Find R = F F' + U2 is the basic factor model
factor.fit

How well does the factor model fit a correlation matrix. Part of the VSS package
multi.hist

Multiple histograms with density and normal fits on one page
msq

75 mood items from the Motivational State Questionnaire for 3896 participants
phi.demo

A simple demonstration of the Pearson, phi, and polychoric corelation
factor.scores

Various ways to estimate factor scores for the factor analysis model
logistic

Logistic transform from x to p and logit transform from p to x
score.multiple.choice

Score multiple choice items and provide basic test statistics
sim.anova

Simulate a 3 way balanced ANOVA or linear model, with or without repeated measures.
scaling.fits

Test the adequacy of simple choice, logistic, or Thurstonian scaling.
tetrachoric

Tetrachoric, polychoric, biserial and polyserial correlations from various types of input
correct.cor

Find dis-attenuated correlations given correlations and reliabilities
set.cor

Set Correlation and Multiple Regression from matrix or raw input
rangeCorrection

Correct correlations for restriction of range. (Thorndike Case 2)
test.psych

Testing of functions in the psych package
sim.VSS

create VSS like data
peas

Galton`s Peas
polychor.matrix

Phi or Yule coefficient matrix to polychoric coefficient matrix
omega

Calculate McDonald's omega estimates of general and total factor saturation
sim.item

Generate simulated data structures for circumplex or simple structure
superMatrix

Form a super matrix from two sub matrices.
sim.multilevel

Simulate multilevel data with specified within group and between group correlations
glb.algebraic

Find the greatest lower bound to reliability.
cohen.kappa

Find Cohen's kappa and weighted kappa coefficients for correlation of two raters
make.keys

Create a keys matrix for use by score.items or cluster.cor
phi2poly

Convert a phi coefficient to a polychoric correlation
neo

NEO correlation matrix from the NEO_PI_R manual
KMO

Find the Kaiser, Meyer, Olkin Measure of Sampling Adequacy
Gorsuch

Example data set from Gorsuch (1997) for an example factor extension.
irt.fa

Item Response Analysis by Exploratory Factor Analysis of tetrachoric/polychoric correlations
guttman

Alternative estimates of test reliabiity
print.psych

Print and summary functions for the psych class
sim.congeneric

Simulate a congeneric data set