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pubh

A toolbox for Public Health and Epidemiology

pubh is an R package for making R functions and capabilities more accessible to students and professionals from epidemiology and public health related disciplines.

Information on use with examples can be found in "vignettes".

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Version

Install

install.packages('pubh')

Monthly Downloads

434

Version

1.2.5

License

GPL-2

Maintainer

Josie Athens

Last Published

October 11th, 2021

Functions in pubh (1.2.5)

Oral contraceptives and stroke.

Survival of patients with sepsis.

Passive smoking in adulthood and cancer risk.

Onchocerciasis in Sierra Leone.

Extracorporeal membrane oxygenation in neonates.

Migraine pain reduction.

T-cell counts from Hodgkin's disease patients.

Breast cancer and age of childbirth.

Prevalence of Helicobacter pylori infection in preschool children.

Bland-Altman agreement plots.

Body weight and plasma volume.

Bootstrap Confidence Intervals.

Measures of association from two by two contingency tables (direct input).

Descriptive statistics for continuous variables.

Diagnostic tests from direct input.

Cosmetics for tables of regression coefficients. Converts tables generated by tbl_regression to huxtable and adds some cosmetics.

Peak knee velocity in walking at flexion and extension.

Apply labels from variables to axis-labels in plots.

Smoking and mortality in Whickham, England.

Table of coefficients from generalised linear models.

Ranks leverage observations from Jackknife method.

Estimate R2 or Pseudo-R2 from regression models

Annotating a plot to display differences between groups.

Jackknife for means.

Sum of squares for Jackknife.

Using labels as coefficient names in tables of coefficients.

Mantel-Haenszel odds ratio.

Rounding p-values.

A theme for huxtables This function quickly set a default style for a huxtable.

Cross-tabulation.

Histogram with Normal density curve.

Cosmetics for summary tables Adds some cosmetics to tables of descriptive statistics generated by tbl_summary.

Construct box plots.

Internal test for chi-squared assumption.Fisher (2 by 2). If results = T, it fails

Measured and self-reported weight in New Zealand.

Table of descriptive statistics by categorical variable.

Expand a data frame.

Relative and Cumulative Frequency.

RCT on the treatment of epilepsy.

Inverse of the logit

Diagnostic tests from variables.

Ranks observations based upon influence measures on models.

Ranks observations by leverage.

Function to calculate OR using Wald CI, and plot trend.

Multiple comparisons with plot.

Pseudo R2 (logistic regression) pseudo_r2 Calculates R2 analogues (pseudo R2) of logistic regression.

Bar charts with error bars.

Goodness of fit for Logistic Regression.

Internal function to calculate descriptive statistics.

Quantile-quantile plots against the standard Normal distribution.

Measures of association from two by two contingency tables (formula).

Given y solve for x in a simple linear model.

Generate a data frame with estimate and bootstrap CIs.

Geometric mean.

Coefficient of determination.

Strip plots with error bars.

reference_range

Reference range (reference interval).

Proportion, p1 from proportion p2 and OR.

Relative Dispersion.