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pubh

A toolbox for Public Health and Epidemiology

pubh is an R package for making R functions and capabilities more accessible to students and professionals from epidemiology and public health related disciplines.

Information on use with examples can be found in "vignettes".

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Version

Install

install.packages('pubh')

Monthly Downloads

438

Version

1.3.2

License

GPL-2

Maintainer

Josie Athens

Last Published

January 11th, 2024

Functions in pubh (1.3.2)

Measures of association from two by two contingency tables (direct input).

Coefficient of determination.

Internal test for chi-squared assumption.Fisher (2 by 2). If results = T, it fails

Annotating a plot to display differences between groups.

Table of coefficients from generalised linear models.

Cosmetics for tables of regression coefficients. Converts tables generated by tbl_regression to huxtable and adds some cosmetics.

Goodness of fit for Logistic Regression.

Mantel-Haenszel odds ratio.

Descriptive statistics for continuous variables.

Estimate R2 or Pseudo-R2 from regression models

Expand a data frame.

Geometric mean.

Pseudo R2 (logistic regression) pseudo_r2 Calculates R2 analogues (pseudo R2) of logistic regression.

Given y solve for x in a simple linear model.

Ranks leverage observations from Jackknife method.

Inverse of the logit

Cosmetics for summary tables Adds some cosmetics to tables of descriptive statistics generated by tbl_summary.

Generate a data frame with estimate and bootstrap CIs.

Table of descriptive statistics by categorical variable.

Quantile-quantile plots against the standard Normal distribution.

Ranks observations based upon influence measures on models.

Function to calculate OR using Wald CI, and plot trend.

Proportion, p1 from proportion p2 and OR.

Measures of association from two by two contingency tables (formula).

Relative and Cumulative Frequency.

Using labels as coefficient names in tables of coefficients.

Multiple comparisons with plot.

Diagnostic tests from direct input.

Diagnostic tests from variables.

Ranks observations by leverage.

Sum of squares for Jackknife.

reference_range

Reference range (reference interval).

Strip plots with error bars.

Relative Dispersion.

Rounding p-values.

Internal function to calculate descriptive statistics.

A theme for huxtables This function quickly set a default style for a huxtable.

Jackknife for means.

Histogram with Normal density curve.

Body weight and plasma volume.

Bootstrap Confidence Intervals.

Prevalence of Helicobacter pylori infection in preschool children.

Migraine pain reduction.

T-cell counts from Hodgkin's disease patients.

Survival of patients with sepsis.

Measured and self-reported weight in New Zealand.

Onchocerciasis in Sierra Leone.

RCT on the treatment of epilepsy.

Oral contraceptives and stroke.

Breast cancer and age of childbirth.

Extracorporeal membrane oxygenation in neonates.

Bar charts with error bars.

Apply labels from variables to axis-labels in plots.

Passive smoking in adulthood and cancer risk.

Bland-Altman agreement plots.

Construct box plots.

Peak knee velocity in walking at flexion and extension.

Smoking and mortality in Whickham, England.