pubmed.mineR (version 1.0.11)

alias_fn: To Find Alias of the Genes.

Description

alias_fn will return the gene alias from the Abstracts using HGNC data.

Usage

alias_fn(genes, data, abs, filename, terms)

Arguments

genes

genes is output of gene_atomization, a table containing gene with its frequency.

data

data is HGNC data

abs

abs an S4 object of class Abstracts.

filename

filename specifies the name of output file.

terms

terms query term to be search in the abstracts. This is to restrict our search for particular theme from the abstracts

Value

It returns an output file containing genes with their corresponding aliases.

See Also

prevsymbol_fn

Examples

# NOT RUN {
alias_fn(genes, HGNCdata, diabetes_abs, "prevsym.txt", c("diabetic nephropathy", "DN")
# }
# NOT RUN {
## genes output of gene_atomization()
# }