pubmed.mineR (version 1.0.11)

gene_atomization: To Extract Genes from the Abstracts

Description

gene_atomization will automatically fetch the genes (HGNC approved Symbol) from the text and report their frequencies. presently only HGNC approved symbols are used.

Usage

gene_atomization(m)

Arguments

m

An S4 object of class Abstracts

Value

A tab delimited table containing gene name and their frequencies of occurence.

Details

The function writes a text file with file name "data_table.txt". The function gene_atomization() is used to obtain the name of genes along with their frequencies of occurence.

Examples

# NOT RUN {
gene_atomization(x)
# }
# NOT RUN {
## here x is an S4 object of class 'Abstracts'containing the abstracts
# }