Ne_delta

se_Ne_delta

Computes the mean realized effective population size.
Note this function expected a mean delta_F value for all individuals in the reference population
Computes the standard error of the realized effective population size.
Note this function expects the mean and standard deviation of delta F, as well as the total number of individuals in the reference population

Inbreeding-purging analysis of pedigreed populations, including the computation of the inbreeding coefficient, partial, ancestral and purged inbreeding coefficients, and measures of the opportunity of purging related to the individual reduction of inbreeding load.
In addition, functions to calculate the effective population size and other parameters relevant to population genetics are included.
See López-Cortegano E. (2021) <doi:10.1093/bioinformatics/btab599>.

Eugenio L<c3><b3>pez-Cortegano

purgeR

Inbreeding-Purging Estimation in Pedigreed Populations

Eugenio López-Cortegano

Ne_delta function

<dl><dt>delta</dt>
<dd>Vector of individual variations in inbreeding.</dd></dl>

Arguments

Realized effective population size (mean) — Ne_delta

<dl>

<dt>delta</dt>
<dd>Vector of individual variations in inbreeding.</dd>

</dl>

Ne_delta: Realized effective population size (mean)

Description

Usage

Value

Arguments