atlas

This data set contains the pedigree of Cuvier's gazelle (Gazella atlas).
A total of 948 individuals is included, as well as measurements of biological fitness
and other factors (see reference below for details).

datasets

Inbreeding-purging analysis of pedigreed populations, including the computation of the inbreeding coefficient, partial, ancestral and purged inbreeding coefficients, and measures of the opportunity of purging related to the individual reduction of inbreeding load.
In addition, functions to calculate the effective population size and other parameters relevant to population genetics are included.
See López-Cortegano E. (2021) <doi:10.1093/bioinformatics/btab599>.

Eugenio L<c3><b3>pez-Cortegano

purgeR

Inbreeding-Purging Estimation in Pedigreed Populations

Eugenio López-Cortegano

atlas function

A data frame with with records from 948 individuals (in rows), and 10 variables:<ul>
<li>id - Individual identity.</li>
<li>dam - Maternal identity.</li>
<li>sire - Paternal identity.</li>
<li>survival15 - 15-days survival.</li>
<li>prod - Female productivity.</li>
<li>sex - Individual sex.</li>
<li>yob - Year of birth.</li>
<li>pom - Period of management.</li>
<li>target - Individual in the target population.</li>
<li>eeza_id - Individual identity (as recorded in the original studbook)</li>
</ul>

atlas: Cuvier's gazelle pedigree

Description

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References