check_names

Columns for id, dam and sire are mandatory. This function checks that they are named in the pedigree.
The function works with arbitrary column names (not 'id', 'dam' and 'sire') to work with ped_rename()

Inbreeding-purging analysis of pedigreed populations, including the computation of the inbreeding coefficient, partial, ancestral and purged inbreeding coefficients, and measures of the opportunity of purging related to the individual reduction of inbreeding load.
In addition, functions to calculate the effective population size and other parameters relevant to population genetics are included.
See López-Cortegano E. (2021) <doi:10.1093/bioinformatics/btab599>.

Eugenio L<c3><b3>pez-Cortegano

purgeR

Inbreeding-Purging Estimation in Pedigreed Populations

Eugenio López-Cortegano

check_names function

<dl><dt>ped</dt>
<dd>A dataframe containing the pedigree. Individual (id), maternal (dam), and paternal (sire) identities are mandatory columns.</dd>
<dt>id_name</dt>
<dd>Column name for individual id.</dd>
<dt>dam_name</dt>
<dd>Column name for dam.</dd>
<dt>sire_name</dt>
<dd>Column name for sire.</dd></dl>

Arguments

Check that mandatory column names are included — check_names

<dl>

<dt>ped</dt>
<dd>A dataframe containing the pedigree. Individual (id), maternal (dam), and paternal (sire) identities are mandatory columns.</dd>


<dt>id_name</dt>
<dd>Column name for individual id.</dd>


<dt>dam_name</dt>
<dd>Column name for dam.</dd>


<dt>sire_name</dt>
<dd>Column name for sire.</dd>

</dl>

check_names: Check that mandatory column names are included

Description

Usage

Value

Arguments