check_order

Individuals must be sorted from older to younger

Inbreeding-purging analysis of pedigreed populations, including the computation of the inbreeding coefficient, partial, ancestral and purged inbreeding coefficients, and measures of the opportunity of purging related to the individual reduction of inbreeding load.
In addition, functions to calculate the effective population size and other parameters relevant to population genetics are included.
See López-Cortegano E. (2021) <doi:10.1093/bioinformatics/btab599>.

Eugenio L<c3><b3>pez-Cortegano

purgeR

Inbreeding-Purging Estimation in Pedigreed Populations

Eugenio López-Cortegano

check_order function

<dl><dt>id</dt>
<dd>Vector of individual ids.</dd>
<dt>dam</dt>
<dd>Vector of dam ids.</dd>
<dt>sire</dt>
<dd>Vector of sire ids.</dd>
<dt>soft_sorting</dt>
<dd>If TRUE checking is relaxed, allowing descendants to be declared before ancestors</dd></dl>

Arguments

Check individual order — check_order

<dl>

<dt>id</dt>
<dd>Vector of individual ids.</dd>


<dt>dam</dt>
<dd>Vector of dam ids.</dd>


<dt>sire</dt>
<dd>Vector of sire ids.</dd>


<dt>soft_sorting</dt>
<dd>If TRUE checking is relaxed, allowing descendants to be declared before ancestors</dd>

</dl>

check_order: Check individual order

Description

Usage

Value

Arguments