Computes the deviation from Hardy-Weinberg equilibrium following Caballero and Toro (2000).

Inbreeding-purging analysis of pedigreed populations, including the computation of the inbreeding coefficient, partial, ancestral and purged inbreeding coefficients, and measures of the opportunity of purging related to the individual reduction of inbreeding load.
In addition, functions to calculate the effective population size and other parameters relevant to population genetics are included.
See López-Cortegano E. (2021) <doi:10.1093/bioinformatics/btab599>.

Eugenio L<c3><b3>pez-Cortegano

purgeR

Inbreeding-Purging Estimation in Pedigreed Populations

Eugenio López-Cortegano

hwd function

<dl><dt>ped</dt>
<dd>A dataframe containing the pedigree. Individual (id), maternal (dam), and paternal (sire) identities are mandatory columns.</dd>
<dt>reference</dt>
<dd>A string naming a column indicating whether individuals belong to the reference population or not. Column must be boolean or coercible to boolean type.</dd></dl>

Arguments

Deviation from Hardy-Weinberg equilibrium — hwd

<dl>

<dt>ped</dt>
<dd>A dataframe containing the pedigree. Individual (id), maternal (dam), and paternal (sire) identities are mandatory columns.</dd>


<dt>reference</dt>
<dd>A string naming a column indicating whether individuals belong to the reference population or not. Column must be boolean or coercible to boolean type.</dd>

</dl>

hwd: Deviation from Hardy-Weinberg equilibrium

Description

Usage

Value

Arguments

References

See Also