reproductive_value

Inbreeding-purging analysis of pedigreed populations, including the computation of the inbreeding coefficient, partial, ancestral and purged inbreeding coefficients, and measures of the opportunity of purging related to the individual reduction of inbreeding load.
In addition, functions to calculate the effective population size and other parameters relevant to population genetics are included.
See López-Cortegano E. (2021) <doi:10.1093/bioinformatics/btab599>.

Eugenio L<c3><b3>pez-Cortegano

purgeR

Inbreeding-Purging Estimation in Pedigreed Populations

Eugenio López-Cortegano

reproductive_value function

<dl><dt>ped</dt>
<dd>A dataframe containing the pedigree. Individual (id), maternal (dam), and paternal (sire) identities are mandatory columns.</dd>
<dt>reference</dt>
<dd>A string naming a column indicating whether individuals belong to the reference population or not. Column must be boolean or coercible to boolean type.</dd>
<dt>name_to</dt>
<dd>A string naming the new output column.</dd>
<dt>target</dt>
<dd>A string naming a column indicating whether individuals belong to the target population or not. Column must be boolean or coercible to boolean type. By default, all descendants of the reference population are used.</dd>
<dt>enable_correction</dt>
<dd>Correct reproductive values.</dd></dl>

Arguments

Reproductive value — reproductive_value

<dl>

<dt>ped</dt>
<dd>A dataframe containing the pedigree. Individual (id), maternal (dam), and paternal (sire) identities are mandatory columns.</dd>


<dt>reference</dt>
<dd>A string naming a column indicating whether individuals belong to the reference population or not. Column must be boolean or coercible to boolean type.</dd>


<dt>name_to</dt>
<dd>A string naming the new output column.</dd>


<dt>target</dt>
<dd>A string naming a column indicating whether individuals belong to the target population or not. Column must be boolean or coercible to boolean type. By default, all descendants of the reference population are used.</dd>


<dt>enable_correction</dt>
<dd>Correct reproductive values.</dd>

</dl>

reproductive_value: Reproductive value

Description

Usage

Value

Arguments

References