w_offspring

Counts the number of offspring for individuals in the pedigree.

Inbreeding-purging analysis of pedigreed populations, including the computation of the inbreeding coefficient, partial, ancestral and purged inbreeding coefficients, and measures of the opportunity of purging related to the individual reduction of inbreeding load.
In addition, functions to calculate the effective population size and other parameters relevant to population genetics are included.
See López-Cortegano E. (2021) <doi:10.1093/bioinformatics/btab599>.

Eugenio L<c3><b3>pez-Cortegano

purgeR

Inbreeding-Purging Estimation in Pedigreed Populations

Eugenio López-Cortegano

w_offspring function

<dl><dt>ped</dt>
<dd>A dataframe containing the pedigree. Individual (id), maternal (dam), and paternal (sire) identities are mandatory columns.</dd>
<dt>name_to</dt>
<dd>A string naming the new output column.</dd>
<dt>dam_offspring</dt>
<dd>Compute dam offspring (TRUE by default).</dd>
<dt>sire_offspring</dt>
<dd>Compute sire offspring (TRUE by default).</dd></dl>

Arguments

Offspring — w_offspring

<dl>

<dt>ped</dt>
<dd>A dataframe containing the pedigree. Individual (id), maternal (dam), and paternal (sire) identities are mandatory columns.</dd>


<dt>name_to</dt>
<dd>A string naming the new output column.</dd>


<dt>dam_offspring</dt>
<dd>Compute dam offspring (TRUE by default).</dd>


<dt>sire_offspring</dt>
<dd>Compute sire offspring (TRUE by default).</dd>

</dl>

w_offspring: Offspring

Description

Usage

Value

Arguments

Examples