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pvca (version 1.12.0)

Principal Variance Component Analysis (PVCA)

Description

This package contains the function to assess the batch sourcs by fitting all "sources" as random effects including two-way interaction terms in the Mixed Model(depends on lme4 package) to selected principal components, which were obtained from the original data correlation matrix. This package accompanies the book "Batch Effects and Noise in Microarray Experiements, chapter 12.

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Version

Version

1.12.0

License

LGPL (>= 2.0)

Maintainer

Jianying LI

Last Published

February 15th, 2017

Functions in pvca (1.12.0)

pvcaBatchAssess

Principal Variance Component Analysis (PVCA)
pvca-package

A package that provides an approach to assess the source of batch effects in a microarray gene expression experiment