OmicsExampleData


A dataset as input example for readOmics: A list containing two input lists,
one for protein data, one for gene data, both including a vector of all
measured IDs as first element and a list as second element including for
each tp a dataframe with IDs and log foldchanges per timepoint.


datasets

pwOmics performs pathway-based level-specific data
comparison of matching omics data sets based on pre-analysed
user-specified lists of differential genes/transcripts and
proteins. A separate downstream analysis of proteomic data
including pathway identification and enrichment analysis,
transcription factor identification and target gene
identification is opposed to the upstream analysis starting
with gene or transcript information as basis for identification
of upstream transcription factors and regulators. The
cross-platform comparative analysis allows for comprehensive
analysis of single time point experiments and time-series
experiments by providing static and dynamic analysis tools for
data integration.

Astrid Wachter

pwOmics

Pathway-based data integration of omics data

OmicsExampleData function

A list with a 'P' sublist containing protein data and a 'G' sublist
containing gene/transcript data. Each of the sublists has a first element
with all measured protein/gene IDs and a second element with a list of the
length of the number of measured time points. Each of these lists contains
a dataframe with a first column of significant protein/gene IDs at that time
point and a second column with the corresponding logFCs.

Format

A dataset as input example for readOmics: A list containing two input lists,
one for protein data, one for gene data, both including a vector of all
measured IDs as first element and a list as second element including for
each tp a dataframe with IDs and log foldchanges per timepoint.

OmicsExampleData: Omics example dataset.

Description

Usage

Arguments

Value

Format