PWidentallprotssub

data_omics

lists of genelists from chosen pathway databases

genelists

integer specifying pathway database genelist matching;
1 = biocarta, 2 = kegg, 3 = nci, 4 = reactome.

genelist_ind

character vector indicating database name for message.

datab


Internal subfunction for all protein pathway identification.


manip

pwOmics performs pathway-based level-specific data
comparison of matching omics data sets based on pre-analysed
user-specified lists of differential genes/transcripts and
proteins. A separate downstream analysis of proteomic data
including pathway identification and enrichment analysis,
transcription factor identification and target gene
identification is opposed to the upstream analysis starting
with gene or transcript information as basis for identification
of upstream transcription factors and regulators. The
cross-platform comparative analysis allows for comprehensive
analysis of single time point experiments and time-series
experiments by providing static and dynamic analysis tools for
data integration.

PWidentallprotssub: Internal subfunction for all protein pathway identification.

Description

Usage

Arguments

Value