findxneighborsoverlap

list of x next neighbors for each transcription factor in
the pathway as provided by findxnextneighbors function.

neighbors

numeric value specifying number of TFs being at least part
of the pathway.

noTFs_inPW

list element of regulators list for current pathway.

regul


Find the overlap of x next neighbors of transcription factors in identified
pathways. Writes the overlap into a given list called 'regulators'.


manip

pwOmics performs pathway-based level-specific data
comparison of matching omics data sets based on pre-analysed
user-specified lists of differential genes/transcripts and
proteins. A separate downstream analysis of proteomic data
including pathway identification and enrichment analysis,
transcription factor identification and target gene
identification is opposed to the upstream analysis starting
with gene or transcript information as basis for identification
of upstream transcription factors and regulators. The
cross-platform comparative analysis allows for comprehensive
analysis of single time point experiments and time-series
experiments by providing static and dynamic analysis tools for
data integration.

Astrid Wachter

pwOmics

Pathway-based data integration of omics data

findxneighborsoverlap function

Find the overlap of x next neighbors of transcription factors in identified
pathways. Writes the overlap into a given list called 'regulators'.

findxneighborsoverlap: Find overlap of next neighbors of transcription factors in identified pathways.

Description

Usage

Arguments

Value