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pwOmics (version 1.4.0)
findxnextneighbors: Find next neighbors of transcription factors in identified pathways.
Description
Produces a list of x next neighbors for each transcription factor in the pathway.
Usage
findxnextneighbors(data_omics, pws_morex_TFs, pwxTFs, order_neighbors)
Arguments
data_omics
OmicsData object.
pws_morex_TFs
list of transcription factors in identified pathways.
pwxTFs
numeric variable of pathway currently investigated (from pws_morexTFs).
order_neighbors
integer specifiying the order of the neighborhood: order 1 is TF plus its immediate neighbors.
Value
list of x next neighbors for each TF in the pathway.