identPWsofTFs

data.table as read/loaded by loadGenelist function.

genelists

data.table of upstream transcription factors and the flag for
enrichment as returned from identTFs function.

tps_TFs


Identification of pathways containing the transcription factors identified in
upstream analysis


manip

pwOmics performs pathway-based level-specific data
comparison of matching omics data sets based on pre-analysed
user-specified lists of differential genes/transcripts and
proteins. A separate downstream analysis of proteomic data
including pathway identification and enrichment analysis,
transcription factor identification and target gene
identification is opposed to the upstream analysis starting
with gene or transcript information as basis for identification
of upstream transcription factors and regulators. The
cross-platform comparative analysis allows for comprehensive
analysis of single time point experiments and time-series
experiments by providing static and dynamic analysis tools for
data integration.

Astrid Wachter

pwOmics

Pathway-based data integration of omics data

identPWsofTFs function

Identification of pathways containing the transcription factors identified in
upstream analysis

identPWsofTFs: Identification of pathways containing the transcription factors identified in upstream analysis

Description

Usage

Arguments

Value