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pwOmics (version 1.4.0)
identRegulators: Identify overlapping upstream regulators of x transcription factors
Description
Identify overlapping upstream regulators of x transcription factors
Usage
identRegulators(pws_morex_TFs, data_omics, order_neighbors, noTFs_inPW)
Arguments
pws_morex_TFs
list of transcription factors in identified pathways.
data_omics
OmicsData object.
order_neighbors
integer specifiying the order of the neighborhood: order 1 is TF plus its immediate neighbors.
noTFs_inPW
integer; only regulators in upstream pathways with more than this number of TFs are identified.
Value
list of possible proteomic regulators.