identRegulators

list of transcription factors in identified pathways.

pws_morex_TFs

data_omics

integer specifiying the order of the neighborhood:
order 1 is TF plus its immediate neighbors.

order_neighbors

integer; only regulators in upstream pathways with more
than this number of TFs are identified.

noTFs_inPW


Identify overlapping upstream regulators of x transcription factors


manip

pwOmics performs pathway-based level-specific data
comparison of matching omics data sets based on pre-analysed
user-specified lists of differential genes/transcripts and
proteins. A separate downstream analysis of proteomic data
including pathway identification and enrichment analysis,
transcription factor identification and target gene
identification is opposed to the upstream analysis starting
with gene or transcript information as basis for identification
of upstream transcription factors and regulators. The
cross-platform comparative analysis allows for comprehensive
analysis of single time point experiments and time-series
experiments by providing static and dynamic analysis tools for
data integration.

identRegulators: Identify overlapping upstream regulators of x transcription factors

Description

Usage

Arguments

Value