identTFTGsinPWs

data_omics

dataframe of unique gene IDs in enriched/not enriched
PWs.

temp_genelist


This function identifies the TFs in the pathway genes and determines their
target genes on basis of the given (chosen) TF-target database(s).


manip

pwOmics performs pathway-based level-specific data
comparison of matching omics data sets based on pre-analysed
user-specified lists of differential genes/transcripts and
proteins. A separate downstream analysis of proteomic data
including pathway identification and enrichment analysis,
transcription factor identification and target gene
identification is opposed to the upstream analysis starting
with gene or transcript information as basis for identification
of upstream transcription factors and regulators. The
cross-platform comparative analysis allows for comprehensive
analysis of single time point experiments and time-series
experiments by providing static and dynamic analysis tools for
data integration.

Astrid Wachter

pwOmics

Pathway-based data integration of omics data

identTFTGsinPWs function

This function identifies the TFs in the pathway genes and determines their
target genes on basis of the given (chosen) TF-target database(s).

identTFTGsinPWs: Prepare OmicsData object for pathway information.

Description

Usage

Arguments

Value