readTFtargets

data_omics

path of txt file containing the transcription factor
target gene information as specified above.

TF_target_path


In case the user is able to provide a file with transcription factor -
target gene matches (e.g. from TRANSFAC database) this function can read in
the information.
The file needs to be a txt file with first column transcription factors and
second column target gene symbols without a header.


manip

pwOmics performs pathway-based level-specific data
comparison of matching omics data sets based on pre-analysed
user-specified lists of differential genes/transcripts and
proteins. A separate downstream analysis of proteomic data
including pathway identification and enrichment analysis,
transcription factor identification and target gene
identification is opposed to the upstream analysis starting
with gene or transcript information as basis for identification
of upstream transcription factors and regulators. The
cross-platform comparative analysis allows for comprehensive
analysis of single time point experiments and time-series
experiments by providing static and dynamic analysis tools for
data integration.

Astrid Wachter

pwOmics

Pathway-based data integration of omics data

readTFtargets function

In case the user is able to provide a file with transcription factor -
target gene matches (e.g. from TRANSFAC database) this function can read in
the information.
The file needs to be a txt file with first column transcription factors and
second column target gene symbols without a header.

readTFtargets: Read in matching transcription factor target gene pairs.

Description

Usage

Arguments

Value