selectPWsofTFs

first element of list returned from identPWsofTFs
function; contains a list of pathways.

pathway_list

second element of list returned from identPWsofTFs
function; contains a data.frame of pathways.

pathway_frame

numeric value specifying number of TFs being at least
part of the pathway.

noTFs_inPW

manip

pwOmics performs pathway-based level-specific data
comparison of matching omics data sets based on pre-analysed
user-specified lists of differential genes/transcripts and
proteins. A separate downstream analysis of proteomic data
including pathway identification and enrichment analysis,
transcription factor identification and target gene
identification is opposed to the upstream analysis starting
with gene or transcript information as basis for identification
of upstream transcription factors and regulators. The
cross-platform comparative analysis allows for comprehensive
analysis of single time point experiments and time-series
experiments by providing static and dynamic analysis tools for
data integration.

selectPWsofTFs: Select pathways with more than x TFs

Description

Usage

Arguments

Value