qgraph v1.6.2
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Graph Plotting Methods, Psychometric Data Visualization and Graphical Model Estimation
Weighted network visualization and analysis, as well as Gaussian graphical model computation. See Epskamp et al. (2012) <doi:10.18637/jss.v048.i04>.
Functions in qgraph
| Name | Description | |
| mutualInformation | Computes the mutual information between nodes | |
| wi2net | Converts precision matrix to partial correlation matrix | |
| qgraphMixed | Plots a mixed graph with both directed and undirected edges. | |
| qgraphAnnotate | Annotates a qgraph object with mouseover tooltips in a HTML file | |
| flow | Draws network as a flow diagram showing how one node is connected to all other nodes | |
| plot.qgraph | Plot method for "qgraph" | |
| pathways | Highlight shortest pathways in a network | |
| centrality and clustering plots | Centrality and Clustering plots and tables | |
| EBICglasso | Compute Gaussian graphical model using graphical lasso based on extended BIC criterium. | |
| averageLayout | Computes an average layout over several graphs | |
| qgraph.animate | Animate a growing network | |
| qgraph.layout.fruchtermanreingold | qgraph.layout.fruchtermanreingold | |
| big5groups | Big 5 groups list | |
| clustcoef_auto | Local clustering coefficients. | |
| ggmModSelect | Unregularized GGM model search | |
| getWmat | Obtain a weights matrix | |
| cor_auto | Automatically compute an apppropriate correlation matrix | |
| smallworldness | Compute the small-worldness index. | |
| ggmFit | Obtain fit measures of a Gaussian graphical model | |
| makeBW | A qgraph plot can be understood in black and white | |
| summary.qgraph | Summary method for "qgraph" | |
| qgraph.loadings | qgraph.loadings | |
| smallworldIndex | Small-world index of unweighted graph | |
| print.qgraph | Print edgelist | |
| qgraph | qgraph | |
| big5 | Big 5 dataset | |
| centrality | Centrality statistics of graphs | |
| centrality_auto | Automatic centrality statistics of graphs | |
| FDRnetwork | Model selection using local False Discovery Rate | |
| VARglm | Computes a vector autoregressive lag-1 model using GLM | |
| findGraph | Search for optimal correlation or partial correlation network | |
| mat2vec | Weights matrix to vector | |
| as.igraph.qgraph | Converts qgraph object to igraph object. | |
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Details
| Type | Package |
| ByteCompile | yes |
| URL | http://sachaepskamp.com/qgraph |
| BugReports | https://github.com/SachaEpskamp/qgraph |
| License | GPL-2 |
| LazyLoad | yes |
| LinkingTo | Rcpp |
| NeedsCompilation | yes |
| Packaged | 2019-05-09 09:46:12 UTC; sachaepskamp |
| Repository | CRAN |
| Date/Publication | 2019-05-09 11:10:04 UTC |
| imports | abind , BDgraph , colorspace , corpcor , d3Network , fdrtool , ggm , ggplot2 , glasso , grDevices , gtools , Hmisc , huge , igraph , jpeg , lavaan , Matrix , methods , parallel , pbapply , plyr , png , psych , Rcpp (>= 1.0.0) , reshape2 |
| depends | R (>= 3.0.0) |
| suggests | sendplot |
| Contributors | Denny Borsboom, Jonas Haslbeck, Giulio Costantini, Angelique O. J. Cramer, Lourens J. Waldorp, Verena D. Schmittmann |
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