Learn R Programming

qgtools (version 2.0)

Generalized Quantitative Genetics Data Analyses

Description

Two linear mixed model approaches: REML(restricted maximum likelihood) and MINQUE (minimum norm quadratic unbiased estimation) approaches and several resampling techniques are integrated for various quantitative genetics analyses. With these two types of approaches, various unbalanced data structures, missing data, and any irregular genetic mating designs can be analyzed and statistically tested. This package also offers fast computations for many large data sets.

Copy Link

Version

Install

install.packages('qgtools')

Monthly Downloads

22

Version

2.0

License

GPL-2

Maintainer

Jixiang Wu

Last Published

December 18th, 2019

Functions in qgtools (2.0)

ADAA model with REML and jacknife analyses

ADC model with REML analysis for multi-parent mating designs

Multi-parental mating design data

AD model with row and column effects

An R function for AD model simulation

AD model with row and column effects analyzed by MINQUE and jackknife

AD model with row and column effects analyzed by REML approach

ADC model, multi-parent mating designs, MINQUE, and jackknife

Additive-dominance (AD) model, multi-parent mating designs, REML, and jackknife

An R function to generate an ADAA model simulated data set

ad4rc.reml.jack

AD model with row and column effects analyzed by MINQUE and jackknife

F2 spring wheat data with row and column

An R function for ADC model simulation.

An R function for ADC model simulation

ADM model with REML analysis

AD model with REML analysis and jackknife resampling test

Cotton F1 and F2 data

ADAA model with MINQUE and jacknife analyses

ADAA model with MINQUE analysis

Additive-dominance (AD) with additive-additive interaction model with REML analysis

ADC model with REML analysis

ADM model awith MINQUE analysis and jackknife test

An R function to generate an ADC model simulated data set

A cotton F2 data set from a 2*6 factorial genetic mating design.

ADC model with REML analysis and jackknife resampling test

ADC model with MINQUE analysis for multi-parent mating designs

An R function to generate an ADM model simulated data set

qgtools-package

A Tool Set for Quantitative Genetics Analyses

An ADC with MINQUE analysis

An R function for ADM model simulation

An R function for AD model simulation.

An ADC model with MINQUE analyses and jackknife tests

AD model with row and column effects analyzed by MINQUE and jackknife

AD model with row and column effects analyzed by MINQUE and jackknife

An R function for ADM model simulation.

ADC model, multi-parent mating designs, REML, and jackknife

ADM model awith REML analysis and jackknife test

AD model with row and column effects analyzed by REML approach

AD model with row and column effects

An ADM model with MINQUE analysis

An R function to generate an AD model simulated data set

Additive-dominance (AD) model with MINQUE analysis for multi-parent mating designs

An R function for AD model simulation

An R function for AD model simulation.

Additive-dominance (AD) model with MINQUE analysis

Additive-dominance (AD) model with MINQUE analysis and jackknife

Additive-dominance (AD) model, multi-parent mating designs, MINQUE, and jackknife

Additive-dominance (AD) model with REML analysis

Additive-dominance (AD) model with REML analysis for multi-parent mating designs