Simple qPCR data import function (i.e. from text files or clipboard)
Sigmoidal model selection by different criteria
Calculation of Akaike weights/relative likelihoods/delta-AICs
Averaging of multiple reference genes
Summarize measures for the goodness-of-fit
The amplification efficiency curve of a fitted object
Batch calculation of qPCR efficiency and other qPCR parameters
Calculation of ratios from qPCR runs with/without reference genes
Comparison of all sigmodal models within the exponential region
Allen's PRESS (Prediction Sum-Of-Squares) statistic, aka P-square
Plotting qPCR data with fitted curves/confidence bands/error bars
Workhorse function for qPCR model fitting
Calculation of PCR efficiency by fitting an exponential model
Advanced qPCR data import function
Calculation of qPCR efficiency by the 'linear regression of efficiency' method
Evidence ratio for model comparisons with AIC, AICc or BIC
An (overlayed) residuals barplot
Calculation of qPCR efficiency and other important qPCR parameters
Akaike's second-order corrected Information Criterion
R-square value of a fitted model
Root-mean-squared-error of a fitted model
Calculation of qPCR efficiency by the 'window-of-linearity' method
Create nonlinear models from a dataframe and coerce them into a list
Residual variance of a fitted model
Residual sum-of-squares of a fitted model
Error propagation using different methods
Combinatorial elimination of plateau and ground phase cycles
Formal lack-Of-Fit test of a nonlinear model against a one-way ANOVA model
Calculation of qPCR efficiency using dilution curves and replicate bootstrapping
(K)inetic (O)utlier (D)etection using several methods
Melting curve analysis with (iterative) Tm identification and peak area calculation/cutoff
Calculation of the 'midpoint' region
Calculation of the qPCR takeoff point
Bootstrapping and jackknifing qPCR data
Cy0 alternative to threshold cycles as in Guescini et al. (2008)
Simulation of sigmoidal qPCR data with goodness-of-fit analysis
Amalgamation of single data models into a model containing replicates
Adjusted R-square value of a fitted model
The chi-square goodness-of-fit
Calculation of likelihood ratios for nested models
The maxRatio method as in Shain et al. (2008)
Value prediction from a fitted qPCR model
Batch calculation of qPCR fit parameters/efficiencies/threshold cycles with simple output, especially tailored to high-throughput data
Outlier summary for objects of class 'modlist' or 'replist'
Parameters that can be changed to tweak the kinetic outlier methods
Display news and changes of qpcR package versions
The (published) datasets implemented in qpcR
Updating and refitting a qPCR model
Calculation of ratios in a batch format for multiple genes/samples
The nonlinear/mechanistic models implemented in qpcR
Calculation of ratios in a batch format from external PCR parameters