The chi-square goodness-of-fit
Simulation of sigmoidal qPCR data with goodness-of-fit analysis
Amalgamation of single data models into a model containing replicates
Sigmoidal model selection by different criteria
Plotting qPCR data with fitted curves
Calculation of likelihood ratios for nested models
Simple qPCR data import function (i.e. from text files or clipboard)
Calculation of qPCR efficiency by the 'window-of-linearity' method
Averaging of multiple reference genes
Create nonlinear models from a dataframe and coerce them into a list
Calculation of the 'midpoint' region
Combinatorial elimination of plateau and ground phase cycles
Calculation of the qPCR takeoff point
Melting curve analysis with (iterative) Tm identification and peak area calculation/cutoff
Parameters that can be changed to tweak the kinetic outlier methods
Workhorse function for qPCR model fitting
The maxRatio method as in Shain et al. (2008)
Summarize measures for the goodness-of-fit
Bootstrapping and jackknifing qPCR data
Batch calculation of qPCR efficiency and other qPCR parameters
Value prediction from a fitted qPCR model
Display news and changes of qpcR package versions
Error propagation using different methods
The nonlinear/mechanistic models implemented in qpcR
Calculation of ratios in a batch format from external PCR parameters
An (overlayed) residuals barplot
Residual variance of a fitted model
Updating and refitting a qPCR model
Advanced qPCR data import function
The (published) datasets implemented in qpcR
Calculation of ratios in a batch format for multiple genes/samples
Calculation of ratios from qPCR runs with/without reference genes
Residual sum-of-squares of a fitted model
(K)inetic (O)utlier (D)etection using several methods
Calculation of qPCR efficiency by the 'linear regression of efficiency' method
Adjusted R-square value of a fitted model
R-square value of a fitted model
Cy0 alternative to threshold cycles as in Guescini et al. (2008)
Root-mean-squared-error of a fitted model
Allen's PRESS (Prediction Sum-Of-Squares) statistic, aka P-square
Calculation of Akaike weights/relative likelihoods/delta-AICs
Formal lack-Of-Fit test of a nonlinear model against a one-way ANOVA model
Akaike's second-order corrected Information Criterion
Calculation of PCR efficiency by fitting an exponential model
The amplification efficiency curve of a fitted object
Calculation of qPCR efficiency using dilution curves and replicate bootstrapping
Comparison of all sigmodal models within the exponential region
Outlier summary for objects of class 'modlist' or 'replist'
Evidence ratio for model comparisons with AIC, AICc or BIC
Batch calculation of qPCR fit parameters/efficiencies/threshold cycles with simple output, especially tailored to high-throughput data
Calculation of qPCR efficiency and other important qPCR parameters