normQpcrQuantile

qBatch


	Implements quantile normalization for a <code><a rd-options="" href="/link/qpcrBatch?package=qpcrNorm&version=1.30.0" data-mini-rdoc="qpcrNorm::qpcrBatch">qpcrBatch</a></code> object. 
	We have adapted this algorithm from the function
	<code><a rd-options="limma:normalizebetweenarrays" href="/link/normalizeBetweenArrays?package=qpcrNorm&version=1.30.0&to=limma%3Anormalizebetweenarrays" data-mini-rdoc="limma:normalizebetweenarrays::normalizeBetweenArrays">normalizeBetweenArrays</a></code>
	from the <span class="pkg">limma</span> package. 
 
	Data in a <code><a rd-options="" href="/link/qpcrBatch?package=qpcrNorm&version=1.30.0" data-mini-rdoc="qpcrNorm::qpcrBatch">qpcrBatch</a></code> object is normalized such that
	within an experiment, the expression distributions 
 
	across plates are more or less identical, and across
	experiments, the expression distributions 
 
	are also now more or less identical. 


methods

The package contains functions to perform normalization of high-throughput qPCR data. Basic functions for processing raw Ct data plus functions to generate diagnostic plots are also available.

Jessica Mar

qpcrNorm

Data-driven normalization strategies for high-throughput qPCR data.

normQpcrQuantile function

Implements quantile normalization for a <code><a href="qpcrBatch" rd-options="">qpcrBatch</a></code> object. 
	We have adapted this algorithm from the function
	<code><a href="normalizeBetweenArrays" rd-options="limma:normalizebetweenarrays">normalizeBetweenArrays</a></code>
	from the <pkg>limma</pkg> package.  
	Data in a <code><a href="qpcrBatch" rd-options="">qpcrBatch</a></code> object is normalized such that
	within an experiment, the expression distributions  
	across plates are more or less identical, and across
	experiments, the expression distributions  
	are also now more or less identical.

normQpcrQuantile: Function for Quantile Normalization of qPCR Data.

Description

Usage

Arguments

Value

See Also

Examples