qtl (version 1.01-9)

max.scantwo: Maximum peak in two-dimensional genome scan

Description

Print the maximum joint LOD and interaction LODs in the results of scantwo.

Usage

## S3 method for class 'scantwo':
max(\dots, na.rm=TRUE)

Arguments

...

An object of class scantwo, the output of the function scantwo. Note that while multiple objects may be input, only the first is considered.

na.rm

A logical indicating whether missing values should be removed.

Value

• An object of class summary.scantwo, to be printed by print.summary.scantwo. Pairs of loci that have the maximum joint and interaction LOD, in the two-dimensional scan.

See Also

scantwo, plot.scantwo, summary.scantwo

Examples

data(fake.f2)
fake.f2 <- calc.genoprob(fake.f2, step=10)
out.2dim <- scantwo(fake.f2, method="hk", chr=c(1,6,13))
max(out.2dim)