plot.cross: Plot various features of a cross object
Description
Plots grid of the missing genotypes, genetic map, and histograms or
barplots of phenotypes for the data from an experimental cross.
Usage
## S3 method for class 'cross':
plot(x, auto.layout=TRUE, pheno, \dots)
Arguments
x
An object of class cross. See
read.cross for details.
auto.layout
If TRUE, par(mfrow) is set so that all plots
fit within one figure.
pheno
Vector of numbers or character strings corresponding to
phenotypes that should be plotted.
...
Ignored at this point.
Value
None.
Details
Calls plot.missing, plot.map and
hist or barplot to plot the
missing genotypes, genetic map, and histograms or barplots of all
phenotypes.
If auto.format=TRUE, par(mfrow) is used with
ceiling(sqrt(n.phe+2)) rows and the minimum number of columns
so that all plots fit on the plotting device.
Numeric phenotypes are displayed as histograms with approximately
$\sqrt{n}+5$ bins. Phenotypes that are factors are
displayed as barplots by calling barplot(table(phe)).