qtl (version 1.38-4)

strip.partials: Strip partially informative genotypes

Description

Replace all partially informative genotypes (e.g., dominant markers in an intercross) with missing values.

Usage

strip.partials(cross, verbose=TRUE)

Arguments

cross

An object of class cross. See read.cross for details.

verbose

If TRUE, print the number of genotypes removed.

Value

• The same class cross object as in the input, but with partially informative genotypes made missing.

See Also

plotMissing, plotInfo

Examples

data(listeria)
sum(nmissing(listeria))
listeria <- strip.partials(listeria)
sum(nmissing(listeria))