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Simulate genotype data for the founding strains for a panel of multiple-strain RIL.
simFounderSnps(map, n.str=c("4","8"), pat.freq)A list whose components are vectors containing the marker locations on each of the chromosomes.
Number of founding strains (4 or 8).
Frequency of SNP genotype patterns in the founder (a
vector of length n.str/2 + 1): (monoallelic, SNP unique to one
founder, SNP present in 2 founders, [and, for the case of 8 founders,
SNP in 3/8 founders, SNP in 4/8 founders].)
A vector of the same length as there are chromosomes in map,
with each component being a matrix of 0's and 1's, of dim n.str
x n.mar.
The SNPs are simulated to be in linkage equilibrium.
data(map10)
x <- simFounderSnps(map10, "8", c(0, 0.5, 0.2, 0.2, 0.1))
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