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Drop markers with duplicate names; retaining the first of each set, with consensus genotyps
drop.dupmarkers(cross, verbose=TRUE)
The input cross
object, with any duplicate markers omitted
(except for one). The marker retained will have consensus genotypes;
if multiple versions of a marker have different genotypes for an
individual, they will be replaced by NA
.
Any derived data (such as produced by calc.genoprob
)
will be stripped off.
An object of class cross
. See
read.cross
for details.
If TRUE, print information on the numbers of genotypes and markers omitted. If > 1, give more detailed information on genotypes omitted.
Karl W Broman, broman@wisc.edu
drop.nullmarkers
, pull.markers
, drop.markers
,
summary.cross
, clean.cross
data(listeria)
listeria <- drop.dupmarkers(listeria)
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