qtl2 (version 0.32)

clean_scan1: Clean scan1 output

Description

Clean scan1 output by replacing negative values with NA and remove rows where all values are NA.

Usage

clean_scan1(object, ...)
# S3 method for scan1
clean(object, ...)

Value

The input object with negative values replaced with NAs and then rows with all NAs removed.

Arguments

object

Output of scan1().

...

Ignored at present

Examples

iron <- read_cross2(system.file("extdata", "iron.zip", package="qtl2"))
iron <- iron[,"2"]
pr <- calc_genoprob(iron)
out <- scan1(pr, iron$pheno)

out <- clean(out)