pull_genoprobpos

Pull out the genotype probabilities for a particular position (by
name)

Provides a set of tools to perform quantitative
trait locus (QTL) analysis in experimental crosses. It is a
reimplementation of the 'R/qtl' package to better handle
high-dimensional data and complex cross designs.
Broman et al. (2019) <doi:10.1534/genetics.118.301595>.

Karl Broman

qtl2

Quantitative Trait Locus Mapping in Experimental Crosses

Karl W Broman

R Core Team 

pull_genoprobpos function

<dl><dt>genoprobs</dt>
<dd>Genotype probabilities as calculated by
<code>calc_genoprob()</code>.</dd>
<dt>map</dt>
<dd>A map object: a list (corresponding to chromosomes) of
vectors of marker positions. Can also be a snpinfo object (data
frame with columns <code>chr</code> and <code>pos</code>; marker names taken from
column <code>snp</code> or if that doesn't exist from the row names)</dd>
<dt>chr</dt>
<dd>A chromosome ID</dd>
<dt>pos</dt>
<dd>A numeric position</dd>
<dt>marker</dt>
<dd>A single character string with the name of the
position to pull out.</dd></dl>

Arguments

Pull genotype probabilities for a particular position — pull_genoprobpos

<dl>

<dt>genoprobs</dt>
<dd>Genotype probabilities as calculated by
<code>calc_genoprob()</code>.</dd>


<dt>map</dt>
<dd>A map object: a list (corresponding to chromosomes) of
vectors of marker positions. Can also be a snpinfo object (data
frame with columns <code>chr</code> and <code>pos</code>; marker names taken from
column <code>snp</code> or if that doesn't exist from the row names)</dd>


<dt>chr</dt>
<dd>A chromosome ID</dd>


<dt>pos</dt>
<dd>A numeric position</dd>


<dt>marker</dt>
<dd>A single character string with the name of the
position to pull out.</dd>

</dl>

pull_genoprobpos: Pull genotype probabilities for a particular position

Description

Usage

Value

Arguments

Details

See Also

Examples