Learn R Programming

R/qtl2convert

Karl Broman

R/qtl2 (aka qtl2) is a reimplementation of the QTL analysis software R/qtl, to better handle high-dimensional data and complex cross designs.

The qtl2convert package is for converting data among the R/qtl2, DOQTL, and R/qtl formats.

Installation

Install the qtl2convert package from CRAN:

install.packages("qtl2convert")

License

Licensed under GPL-3.

Copy Link

Version

Install

install.packages('qtl2convert')

Monthly Downloads

272

Version

0.30

License

GPL-3

Issues

0

Pull Requests

0

Stars

5

Forks

3

Maintainer

Karl Broman

Last Published

April 4th, 2024

Functions in qtl2convert (0.30)

cbind_smother

Combine matrices by columns, replacing matching ones and adding unique ones
cross2_do_to_genail8

Convert cross2 object from do to genail8
probs_doqtl_to_qtl2

Convert DOQTL genotype probabilities to R/qtl2 format
find_unique_geno

Find the unique genotypes for each row of a genotype matrix
encode_geno

Encode a matrix of genotypes using a set of allele codes
count_unique_geno

Count the unique genotypes for each row of a genotype matrix
map_list_to_df

Marker map list to data frame
find_consensus_geno

Find the consensus genotype for each row of a genotype matrix
cross2_ril_to_genril

Convert cross2 object from ril to genril
map_df_to_list

Marker map data frame to list
write2csv

Write a data frame to a CSV file
probs_qtl_to_qtl2

Convert R/qtl genotype probabilities to R/qtl2 format
probs_qtl2_to_array

Convert R/qtl2 genotype probabilities to a 3d array
qtl2convert-package

qtl2convert: Convert Data among QTL Mapping Packages
probs_qtl2_to_doqtl

Convert R/qtl2 genotype probabilities to DOQTL format
scan_qtl2_to_qtl

Convert scan1 results to the scanone format
scan_qtl_to_qtl2

Convert R/qtl scanone results to R/qtl2 scan1 format