get_gene_snp

Internal routine to find features that overlap with SNPs

utilities

Routines in 'qtl2' to study allele patterns in quantitative trait loci (QTL)
mapping over a chromosome.
Useful in crosses with more than two alleles to identify how sets of alleles,
genetically different strands at the same locus, have different response levels.
Plots show profiles over a chromosome.
Can handle multiple traits together.
See <https://github.com/byandell/qtl2pattern>.

Brian Yandell

qtl2pattern

Pattern Support for 'qtl2' Package

Brian S Yandell 

get_gene_snp function

<dl><dt>snp_tbl</dt>
<dd>tbl of SNPs from <code>query_variants</code>; see package <code>create_variant_query_func</code></dd>
<dt>feature_tbl</dt>
<dd>tbl of feature information from <code>query_genes</code>; see package <code>create_gene_query_func</code></dd>
<dt>feature_snp</dt>
<dd>tbl of feature information from <code>get_feature_snp</code></dd></dl>

Arguments

Brian S Yandell, <a href="/link/brian.yandell%40wisc.edu?package=qtl2pattern&version=1.2.1" data-mini-rdoc="qtl2pattern::brian.yandell@wisc.edu">brian.yandell@wisc.edu</a>

Author

Match genes with SNPs — get_gene_snp

<dl>

<dt>snp_tbl</dt>
<dd>tbl of SNPs from <code>query_variants</code>; see package <code>create_variant_query_func</code></dd>


<dt>feature_tbl</dt>
<dd>tbl of feature information from <code>query_genes</code>; see package <code>create_gene_query_func</code></dd>


<dt>feature_snp</dt>
<dd>tbl of feature information from <code>get_feature_snp</code></dd>

</dl>

Brian S Yandell, <a href='mailto:brian.yandell@wisc.edu'>brian.yandell@wisc.edu</a>

get_gene_snp: Match genes with SNPs

Description

Usage

Value

Arguments

Author