pattern_diplos

pattern_haplos

Extract pattern of diplotypes
Extract pattern of haplotypes

utilities

Routines in 'qtl2' to study allele patterns in quantitative trait loci (QTL)
mapping over a chromosome.
Useful in crosses with more than two alleles to identify how sets of alleles,
genetically different strands at the same locus, have different response levels.
Plots show profiles over a chromosome.
Can handle multiple traits together.
See <https://github.com/byandell/qtl2pattern>.

Brian Yandell

qtl2pattern

Pattern Support for 'qtl2' Package

Brian S Yandell 

pattern_diplos function

<dl><dt>sdp</dt>
<dd>vector of sdp from <code>top_snps_pattern</code></dd>
<dt>haplos</dt>
<dd>vector of haplotype names</dd>
<dt>diplos</dt>
<dd>vector of diplotype names</dd>
<dt>cont</dt>
<dd>vector of types of contrasts (<code>NULL</code> or from <code>c("add","dom","b6r","b6d")</code>)</dd></dl>

Arguments

Brian S Yandell, <a href="/link/brian.yandell%40wisc.edu?package=qtl2pattern&version=1.2.1" data-mini-rdoc="qtl2pattern::brian.yandell@wisc.edu">brian.yandell@wisc.edu</a>

Author

Extract pattern of diplotypes — pattern_diplos

<dl>

<dt>sdp</dt>
<dd>vector of sdp from <code>top_snps_pattern</code></dd>


<dt>haplos</dt>
<dd>vector of haplotype names</dd>


<dt>diplos</dt>
<dd>vector of diplotype names</dd>


<dt>cont</dt>
<dd>vector of types of contrasts (<code>NULL</code> or from <code>c("add","dom","b6r","b6d")</code>)</dd>

</dl>

Brian S Yandell, <a href='mailto:brian.yandell@wisc.edu'>brian.yandell@wisc.edu</a>

pattern_diplos: Extract pattern of diplotypes

Description

Usage

Value

Arguments

Author