pattern_label

pattern_sdp

Turn genotype probabilities into labels

Routines in 'qtl2' to study allele patterns in quantitative trait loci (QTL)
mapping over a chromosome.
Useful in crosses with more than two alleles to identify how sets of alleles,
genetically different strands at the same locus, have different response levels.
Plots show profiles over a chromosome.
Can handle multiple traits together.
See <https://github.com/byandell/qtl2pattern>.

Brian Yandell

qtl2pattern

Pattern Support for 'qtl2' Package

Brian S Yandell 

pattern_label function

<dl><dt>genos</dt>
<dd>matrix of genotype probabilities at locus</dd>
<dt>allele</dt>
<dd>Driver has alleles if <code>TRUE</code>, otherwise allele pairs.</dd>
<dt>label</dt>
<dd>character string from <code>pattern_label</code></dd>
<dt>sdp</dt>
<dd>SNP distribution pattern for plot colors</dd>
<dt>geno_names</dt>
<dd>unique genotype names (alleles or allele pairs)</dd></dl>

Arguments

Turn genotype probabilities into labels — pattern_label

<dl>

<dt>genos</dt>
<dd>matrix of genotype probabilities at locus</dd>


<dt>allele</dt>
<dd>Driver has alleles if <code>TRUE</code>, otherwise allele pairs.</dd>


<dt>label</dt>
<dd>character string from <code>pattern_label</code></dd>


<dt>sdp</dt>
<dd>SNP distribution pattern for plot colors</dd>


<dt>geno_names</dt>
<dd>unique genotype names (alleles or allele pairs)</dd>

</dl>

pattern_label: Turn genotype probabilities into labels

Description

Usage

Value

Arguments