check_missingness

input_matrix

<p>We use `is.finite` from base R to identify those subjects that have one or
more missing values in `input_matrix`. We then return a character vector of subjects
that have no missingness in `input_matrix`.</p>

We implement an
adaptation of Jiang & Zeng's (1995) <https://www.genetics.org/content/140/3/1111> likelihood ratio test for testing
the null hypothesis of pleiotropy against the alternative hypothesis,
two separate quantitative trait loci. The test differs from that in Jiang & Zeng (1995) <https://www.genetics.org/content/140/3/1111>
and that in Tian et al. (2016) <doi:10.1534/genetics.115.183624> in
that our test accommodates multiparental populations.

Frederick Boehm

qtl2pleio

check_missingness: Check for missingness in phenotypes or covariates

Description

Usage

Arguments

Value