make_id2keep

probs

pheno

addcovar

kinship

<p>We consider only those inputs that are not NULL. We then use `intersect` on pairs
of inputs' rownames to identify those subjects are shared among all non-NULL inputs.</p>

We implement an
adaptation of Jiang & Zeng's (1995) <https://www.genetics.org/content/140/3/1111> likelihood ratio test for testing
the null hypothesis of pleiotropy against the alternative hypothesis,
two separate quantitative trait loci. The test differs from that in Jiang & Zeng (1995) <https://www.genetics.org/content/140/3/1111>
and that in Tian et al. (2016) <doi:10.1534/genetics.115.183624> in
that our test accommodates multiparental populations.

Frederick Boehm

qtl2pleio

Testing Pleiotropy in Multiparental Populations

Frederick J Boehm

make_id2keep function

Identify shared subject ids among all inputs: covariates, allele probabilities array, kinship, and phenotypes — make_id2keep

Identify shared subject ids among all inputs: covariates, allele probabilities array, kinship, and phenotypes

make_id2keep: Identify shared subject ids among all inputs: covariates, allele probabilities array, kinship, and phenotypes

Description

Usage

Arguments

Value