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qtlDesign (version 0.92)

Design of QTL experiments

Description

Tools for the design of QTL experiments

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Version

Install

install.packages('qtlDesign')

Monthly Downloads

142

Version

0.92

License

GPL version 2 or newer (http://www.gnu.org/copyleft/gpl.html)

Maintainer

Saunak Sen

Last Published

April 15th, 2024

Functions in qtlDesign (0.92)

Information

Information under null hypothesis of equal means
Optimal marker spacing

Optimal marker spacing
Utility

Utility functions
Package version

Version of qtlDesign package
missinfo

Calculate fraction of missing information by numerical integration
Information-cost functions

Functions to calculate information-cost ratios
Power calculations

Power, sample size, and detectable effect size calculations
Variance and effect size

Effect size, proportion variance explained, and error variance calculations
qtlDesign-internal

qtlDesign-internal
mma.level

MMA utility
fracmiss

Calculate fraction of missing information for single observation
mma

Selective phenotyping with similarity measure 2
Optimal selection fraction

Optimal selection fraction
K1

Calculate scores for minimum moment abberations.
Confidence interval expected widths

Calculating expected QTL confidence interval widths
missinfo.sim

Calculate fraction of missing information by simulation
Thresholds and tail probabilities

Calculating thresholds and tail probabilities for genome scans