neqtl

neqtl.R Ported from http://github.com/kbroman/neqtl

Functions to infer co-mapping trait hotspots and causal models.
Chaibub Neto E, Keller MP, Broman AF, Attie AD, Jansen RC, Broman KW, Yandell BS (2012)
Quantile-based permutation thresholds for QTL hotspots. Genetics 191 : 1355-1365.
<doi:10.1534/genetics.112.139451>.
Chaibub Neto E, Broman AT, Keller MP, Attie AD, Zhang B, Zhu J, Yandell BS (2013)
Modeling causality for pairs of phenotypes in system genetics. Genetics 193 : 1003-1013.
<doi:10.1534/genetics.112.147124>.

Brian Yandell

qtlhot

Inference for QTL Hotspots

neqtl function

<dl><dt>sigpos.out</dt>
<dd>position(s) of max</dd>
<dt>chr</dt>
<dd>chromosome as character</dd>
<dt>pos</dt>
<dd>position on chromosome</dd>
<dt>win</dt>
<dd>window width in cM</dd></dl>

Arguments

neqtl.R Ported from http://github.com/kbroman/neqtl — neqtl

<dl>

<dt>sigpos.out</dt>
<dd>position(s) of max</dd>


<dt>chr</dt>
<dd>chromosome as character</dd>


<dt>pos</dt>
<dd>position on chromosome</dd>


<dt>win</dt>
<dd>window width in cM</dd>

</dl>

neqtl: neqtl.R Ported from http://github.com/kbroman/neqtl

Description

Usage

Arguments