RDocumentation
Moon
Learn R
Search all packages and functions
⚠️
There's a newer version (1.5.4) of this package.
Take me there.
qtlnet (version 1.2.4)
Causal Inference of QTL Networks
Description
Functions to Simultaneously Infer Causal Graphs and Genetic Architecture
Copy Link
Copy
Link to current version
Version
Version
1.5.4
1.4.4
1.3.6
1.3.5
1.3.3
1.2.5
1.2.4
Down Chevron
Install
install.packages('qtlnet')
Monthly Downloads
211
Version
1.2.4
License
GPL (>= 2)
Maintainer
Brian S Yandell
Last Published
June 8th, 2012
Functions in qtlnet (1.2.4)
Search functions
acyclic
Acyclic graph example
qdg.sem
Score directed graphs outputed by qdg using structural equation models (SEM)
parents.qtlnet
Determine and group node-parent combinations.
loci.qtlnet
QTL architecture per node as list
plot.qdg
Plot a directed graph
parallel.qtlnet
Code to parallelize use of qtlnet
generate.qtl
Generate QTLs ane phenotypes from cross object
qdg
Produces a directed graph using QDG algorithm
glxnet
Generate and graph Glx network
igraph.qtlnet
qtlnet plot using igraph
subset.qtlnet
Catenate or subset qtlnet object(s).
write.qtlnet
write qtlnet as text file
Pscdbp
Cross and qtlnet objects with Ghazalpour et al. (2006) data. Only 13 phenotypes are included.
dist.qtlnet
QTL network diagnostic routines
cyclica
Cyclic graph (a) example
bic.qtlnet
Pre-compute BIC values for qtlnet sampling.
cyclicb
Cyclic graph (b) example
qdg.perm.test
Conduct permutation test for LOD score of edge direction on directed graph
mcmc.qtlnet
Sample genetic architecture and QTL network
cyclicc
Cyclic graph (c) example
summary.qtlnet
summary of model average network and posterior table
graphviz.qtlnet
qtlnet plot using Rgraphviz