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qtlnet (version 1.2.5)
Causal Inference of QTL Networks
Description
Functions to Simultaneously Infer Causal Graphs and Genetic Architecture
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Install
install.packages('qtlnet')
Monthly Downloads
209
Version
1.2.5
License
GPL (>= 2)
Maintainer
Brian S Yandell
Last Published
June 25th, 2012
Functions in qtlnet (1.2.5)
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mcmc.qtlnet
Sample genetic architecture and QTL network
acyclic
Acyclic graph example
qdg.perm.test
Conduct permutation test for LOD score of edge direction on directed graph
qdg
Produces a directed graph using QDG algorithm
glxnet
Generate and graph Glx network
graphviz.qtlnet
qtlnet plot using Rgraphviz
subset.qtlnet
Catenate or subset qtlnet object(s).
parallel.qtlnet
Code to parallelize use of qtlnet
Pscdbp
Cross and qtlnet objects with Ghazalpour et al. (2006) data. Only 13 phenotypes are included.
write.qtlnet
write qtlnet as text file
parents.qtlnet
Determine and group node-parent combinations.
dist.qtlnet
QTL network diagnostic routines
summary.qtlnet
summary of model average network and posterior table
cyclicc
Cyclic graph (c) example
loci.qtlnet
QTL architecture per node as list
generate.qtl
Generate QTLs ane phenotypes from cross object
cyclicb
Cyclic graph (b) example
qdg.sem
Score directed graphs outputed by qdg using structural equation models (SEM)
plot.qdg
Plot a directed graph
cyclica
Cyclic graph (a) example
bic.qtlnet
Pre-compute BIC values for qtlnet sampling.
igraph.qtlnet
qtlnet plot using igraph