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qtlnet (version 1.3.5)
Causal Inference of QTL Networks
Description
Functions to Simultaneously Infer Causal Graphs and Genetic Architecture
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Install
install.packages('qtlnet')
Monthly Downloads
209
Version
1.3.5
License
GPL (>= 2)
Maintainer
Brian S Yandell
Last Published
September 16th, 2013
Functions in qtlnet (1.3.5)
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glxnet
Generate and graph Glx network
graphviz.qtlnet
qtlnet plot using Rgraphviz
qdg.sem
Score directed graphs outputed by qdg using structural equation models (SEM)
plot.qdg
Plot a directed graph
parents.qtlnet
Determine and group node-parent combinations.
igraph.qtlnet
qtlnet plot using igraph
Pscdbp
Cross and qtlnet objects with Ghazalpour et al. (2006) data. Only 13 phenotypes are included.
loci.qtlnet
QTL architecture per node as list
cyclica
Cyclic graph (a) example
bic.qtlnet
Pre-compute BIC values for qtlnet sampling.
qdg
Produces a directed graph using QDG algorithm
subset.qtlnet
Catenate or subset qtlnet object(s).
generate.qtl
Generate QTLs ane phenotypes from cross object
cyclicc
Cyclic graph (c) example
qdg.perm.test
Conduct permutation test for LOD score of edge direction on directed graph
acyclic
Acyclic graph example
write.qtlnet
write qtlnet as text file
parallel.qtlnet
Code to parallelize use of qtlnet
cyclicb
Cyclic graph (b) example
dist.qtlnet
QTL network diagnostic routines
mcmc.qtlnet
Sample genetic architecture and QTL network
summary.qtlnet
summary of model average network and posterior table