Usage
## S3 method for class 'qdg':
plot(x, simple = FALSE, breaks = c(1, 3, 10, 20),
col = c(pos.color = "green", neg.color = "red",
pheno.color = "yellow", qtl.color = "magenta"),
include.qtl = TRUE, ...)
Arguments
x
list containing the output of the qdgAlgo or qdgSEM functions.
simple
plot a simple graph (no QTL nodes, color or varying node size or
arrow thickness).
breaks
control the thickness of the arrows according to the values of the
LOD scores. Must be a vector of length four.
col
color of the arrows. When plotting from qdgSEM green and red arrows
represent positive and negative path coefficients, respectively. Arrows are
black by default when plotting from qdgAlgo.
include.qtl
If TRUE, the QTL nodes are included in the plot.
...
Plot arguments (not used).