final_cleaned

A <code>data_frame</code> that was created with the Cleaning Quadrat
Data from CoralNet. This is an example data frame of how the <code>quadcleanR</code>
package can be useful in cleaning quadrat data.

datasets

A tool that can be customized to aid in the clean up of ecological data
collected using quadrats and can crop quadrats to ensure comparability between
quadrats collected under different methodologies.

Dominique Maucieri

quadcleanR

Cleanup and Visualization of Quadrat Data

final_cleaned function

A <code>data_frame</code> with 14 columns, which are:<dl>
<dt>Field.Season</dt>
<dd>Field season ID.</dd><dt>TimeBlock</dt>
<dd>If the sampling season was before, during or after the El Niño event.</dd><dt>Site</dt>
<dd>Site number.</dd><dt>Quadrat</dt>
<dd>Quadrat ID.</dd><dt>HD_Cat</dt>
<dd>Estimate of local human disturbance at each site as a categorical
variable.</dd><dt>HD_Cont</dt>
<dd>Estimate of local human disturbance at each site as a continuous
variable.</dd><dt>NPP</dt>
<dd>Max net primary productivity at each site (mg C m^-2 day^-1).</dd><dt>WE</dt>
<dd>If the sampling site is on the sheltered or windward side of the atoll.</dd><dt>Region</dt>
<dd>Region of the atoll.</dd><dt>WaveEnergy</dt>
<dd>Wave energy at each site (kW m^-1).</dd><dt>Taxonomic_Name</dt>
<dd>Taxonomic name for each substrate.</dd><dt>functional_group</dt>
<dd>Functional group for each substrate.</dd><dt>life_history</dt>
<dd>Life history classification for each substrate.</dd><dt>prop_cover</dt>
<dd>The proportion cover for each substrate.</dd>
</dl>

Format

Final cleaned quadrat data — final_cleaned

A <code>data_frame</code> with 14 columns, which are:<dl>
<dt>Field.Season</dt>
<dd>Field season ID.</dd>

<dt>TimeBlock</dt>
<dd>If the sampling season was before, during or after the El Niño event.</dd>

<dt>Site</dt>
<dd>Site number.</dd>

<dt>Quadrat</dt>
<dd>Quadrat ID.</dd>

<dt>HD_Cat</dt>
<dd>Estimate of local human disturbance at each site as a categorical
variable.</dd>

<dt>HD_Cont</dt>
<dd>Estimate of local human disturbance at each site as a continuous
variable.</dd>

<dt>NPP</dt>
<dd>Max net primary productivity at each site (mg C m^-2 day^-1).</dd>

<dt>WE</dt>
<dd>If the sampling site is on the sheltered or windward side of the atoll.</dd>

<dt>Region</dt>
<dd>Region of the atoll.</dd>

<dt>WaveEnergy</dt>
<dd>Wave energy at each site (kW m^-1).</dd>

<dt>Taxonomic_Name</dt>
<dd>Taxonomic name for each substrate.</dd>

<dt>functional_group</dt>
<dd>Functional group for each substrate.</dd>

<dt>life_history</dt>
<dd>Life history classification for each substrate.</dd>

<dt>prop_cover</dt>
<dd>The proportion cover for each substrate.</dd>


</dl>

final_cleaned: Final cleaned quadrat data

Description

Usage

Arguments

Format