clean_query

Accessory function removing invalid values from a query

Retrieve protein information from
the 'UniProtKB' REST API (see <https://www.uniprot.org/help/api_queries>).

Guillaume Voisinne

queryup

Query the 'UniProtKB' REST API

clean_query function

<dl><dt>query</dt>
<dd>list of keys corresponding to UniProt's query fields.
For example :
list("gene_exact" = c("Pik3r1", "Pik3r2") ,
"organism" = c("10090", "9606"), "reviewed" = "yes")</dd>
<dt>df</dt>
<dd>data.frame with invalid values (in column "value") and
corresponding query field (in column "field").</dd></dl>

Arguments

Accessory function removing invalid values from a query — clean_query

<dl>

<dt>query</dt>
<dd>list of keys corresponding to UniProt's query fields.
For example :
list("gene_exact" = c("Pik3r1", "Pik3r2") ,
"organism" = c("10090", "9606"), "reviewed" = "yes")</dd>


<dt>df</dt>
<dd>data.frame with invalid values (in column "value") and
corresponding query field (in column "field").</dd>

</dl>

clean_query: Accessory function removing invalid values from a query

Description

Usage

Value

Arguments