add_reps

Adds replicate information to the sample IDs. Well IDs should be formatted
like so: A4, B9, H11, J24

Designed for the curation and analysis of data generated from real-time quaking-induced conversion (RT-QuIC) assays first described by Atarashi et al. (2011) <doi:10.1038/nm.2294>. 'quicR' calculates useful metrics such as maxpoint ratio: Rowden et al. (2023) <doi:10.1099/vir.0.069906-0>; time-to-threshold: Shi et al. (2013) <doi:10.1186/2051-5960-1-44>; and maximum slope. Integration with the output from plate readers allows for seamless input of raw data into the R environment.

Gage Rowden

quicR

RT-QuIC Data Formatting and Analysis

add_reps function

<dl><dt>df</dt>
<dd>A dataframe containing two columns for well IDs and Sample IDs</dd>
<dt>sep</dt>
<dd>a character string to separate the terms.</dd></dl>

Arguments

Add replicates — add_reps

<dl>

<dt>df</dt>
<dd>A dataframe containing two columns for well IDs and Sample IDs</dd>


<dt>sep</dt>
<dd>a character string to separate the terms.</dd>

</dl>

add_reps: Add replicates

Description

Usage

Value

Arguments