separate_raw

If multiple real-time reads were exported from MARS, separate_raw will parse
them out and separate them. It will also export to an Excel file with each
real-time data having its own sheet.

Designed for the curation and analysis of data generated from real-time quaking-induced conversion (RT-QuIC) assays first described by Atarashi et al. (2011) <doi:10.1038/nm.2294>. 'quicR' calculates useful metrics such as maxpoint ratio: Rowden et al. (2023) <doi:10.1099/vir.0.069906-0>; time-to-threshold: Shi et al. (2013) <doi:10.1186/2051-5960-1-44>; and maximum slope. Integration with the output from plate readers allows for seamless input of raw data into the R environment.

Gage Rowden

quicR

RT-QuIC Data Formatting and Analysis

separate_raw function

<dl><dt>file</dt>
<dd>An Excel file exported from MARS.</dd>
<dt>num_rows</dt>
<dd>Number of rows in the header to ignore.</dd>
<dt>export_name</dt>
<dd>The name of the original file or an orignal name.</dd></dl>

Arguments

Separate Real-Time Data into separate dataframes. — separate_raw

<dl>

<dt>file</dt>
<dd>An Excel file exported from MARS.</dd>


<dt>num_rows</dt>
<dd>Number of rows in the header to ignore.</dd>


<dt>export_name</dt>
<dd>The name of the original file or an orignal name.</dd>

</dl>

separate_raw: Separate Real-Time Data into separate dataframes.

Description

Usage

Value

Arguments